| Achievement | How to unlock | Points
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| - Upgrade Crypto at Pox's Lab in the mothership.
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- And a Pox on Your Saucer Too
| - Upgrade your saucer at Pox's Lab in the mothership.
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| - Abduct a cow with your saucer.
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| - Consume a human brain to kickstart your shield regeneration.
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| - Ace an Abduction challenge with a three-star rating.
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| - Stay covert by scanning primitive human thoughts.
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| - Demonstrate Furon free spirit near a warning sign placed by the human authorities.
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| - Revisit a missionless invasion site and complete a challenge there.
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| - Throw a human into the air and juggle them.
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- For the Glory of the Furon Empire!
| - Destroy humanity's last hope and initiate the subjugation of the species.
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| - Ace a Race challenge with a three-star rating.
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| - Explore the more offbeat parts of the mothership.
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| - Abduct and drain a vehicle to replenish your saucer's shields.
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| - Fully upgrade one of the branches of a weapon or ability.
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| - Display Furonic aeronautic prowess by soaring through giant human pastry without soiling your feet.
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| - Evade a rocket by dashing.
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| - Destroy the pathetic human attempt at a robot overlord.
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- Invasion of the Body Swappers
| - Try out a new look for Crypto in the mothership's archives.
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| - Obtain at least a two-star rating for each challenge type.
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| - Destroy multiple humans with a human-made explosive.
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| - Destroy a human with a weapon and another with a psi ability at the same time.
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| - Set something on fire, then use it to destroy a hapless human.
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| - Transmogrify an object to replenish your ammunition.
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| - Throw something into something else with the saucer's Abducto Beam.
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- Return of the Clone II - Reloaded
| - Re-visit a mission in the mothership archive's Holopoxdeck.
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| - Ace a Rampage challenge with a three-star rating.
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| - Use your saucer's Repulse-O-Tron to fend off homing missiles.
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| - Accelerate Brain Extract or Transmog by mashing that button like you mean it.
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| - Ace an Armageddon challenge with a three-star rating.
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| - Complete all optional mission objectives! (Use the Holopoxdeck if you have to.)
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| - Destroy a certain irritating simian warlord once and for all.
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| - Use PK to destroy a human with another human.
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