| Achievement | How to unlock
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| A Big Fan of Lefties (20 points) | Acquire all enemy officers' left arms.
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| A Lover, Not a Fighter (20 points) | Successfully complete 10 No Kill battles during story mode.
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| A Walk in the Dark (15 points) | Complete the sewer sequence in File R-03 without using AR Mode.
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| Amateur Radio Operator (50 points) | Listen to most of the codec conversations.
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| Analysis Complete (20 points) | Unlock every VR Mission.
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| Anti-Cyborg Sentiment (5 points) | Destroy a total of 100 Cyborgs during story mode.
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| Assassin Behind Closed Doors (15 points) | Successfully complete 30 Ninja Kills during story mode.
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| Assault with a Deadly Weapon (20 points) | Dismember three enemies during Blade Mode with a single attack.
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| Becoming a Lightning God (50 points) | Complete story mode on Revengeance difficulty with all S rankings.
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| Chosen by History (30 points) | Defeat Samuel without taking any damage on Hard difficulty or above.
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| Data Mining (20 points) | Acquire all data storage devices.
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| Datsu Right (15 points) | Successfully complete 50 Zandatsus during story mode.
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| Demilitarized Zone (15 points) | Destroy a total of 100 Heavily Armed Cyborgs during story mode.
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| Dwarf Raiden (15 points) | Incapacitate all the soldiers in File R-02 using a Dwarf Gekko.
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| Extinction Level Event (20 points) | Destroy a total of 10 Raptors during story mode.
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| File R-00: Status - Closed (15 points) | Complete File R-00: Guard Duty.
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| File R-01: Status - Closed (15 points) | Complete File R-01: Coup d'État.
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| File R-02: Status - Closed (15 points) | Complete File R-02: Research Facility.
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| File R-03: Status - Closed (15 points) | Complete File R-03: Mile High.
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| File R-04: Status - Closed (15 points) | Complete File R-04: Hostile Takeover.
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| File R-05: Status - Closed (15 points) | Complete File R-05: Escape From Denver.
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| File R-06: Status - Closed (15 points) | Complete File R-06: Badlands Showdown.
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| File R-07: Status - Closed (15 points) | Complete File R-07: Assassination Attempt.
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| Genius Destroyer (30 points) | Defeat Monsoon without taking any damage on Hard difficulty or above.
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| Great Escape (20 points) | Complete File R-05 in less than 7 minutes.
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| Herpetophobia (20 points) | Destroy a total of 10 Gekkos during story mode.
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| Humanitarian Assistance (25 points) | Rescue all the civilians.
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| Ich Liebe Kapitalismus! (20 points) | Acquire all customization items.
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| Jumping the Shark (20 points) | Destroy a total of 10 Hammerheads during story mode.
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| Looking Out for the Little Guys (5 points) | Destroy a total of 30 Dwarf Gekkos during story mode.
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| Love at First Sight (15 points) | While remotely operating a Dwarf Gekko in story mode, find and communicate with all Dwarf Gekkos.
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| Menace to Society (5 points) | Cut off the finial at the top of the pagoda in File R-04.
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| No Flash Photography! (15 points) | Destroy all the Gun Cameras in File R-01.
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| Peekaboo (20 points) | Discover all of the soldiers hidden in cardboard boxes.
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| Pond Scum (20 points) | Destroy a total of 5 Vodomjerka during story mode.
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| Prodigal Murderer (30 points) | Defeat Mistral without taking any damage on Hard difficulty or above.
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| Rip 'Em Apart! (15 points) | In story mode, kill 100 enemies by cutting them.
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| Silverback (15 points) | Destroy a total of 10 Mastiffs during story mode.
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| Slider Strike (15 points) | Destroy a total of 10 Sliders during story mode.
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| Steel Tail (15 points) | Cut off Metal Gear RAY's metal tail during File R-00.
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| Surprise Attack! (20 points) | Arrive at the objective in File R-07 without being spotted.
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| Tearing Away the Disguise (20 points) | Destroy all of the humanoid Dwarf Gekkos during story mode.
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| The Bigger They Are... (10 points) | Destroy a total of 100 Custom Cyborgs during story mode.
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| The Politics of Silencing Foes (30 points) | Defeat Sen. Armstrong without taking any damage on Hard difficulty or above.
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| Truly Human (30 points) | Defeat Sundowner without taking any damage on Hard difficulty or above.
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| Virtually a God (50 points) | Set the highest score on every VR Mission.
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| VR Master (30 points) | Complete every VR Mission.
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| What Doesn't Kill You... (20 points) | In story mode, successfully parry 10 attacks in a row in one minute or less.
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| Wolf Hunter (20 points) | Destroy a total of 10 Fenrirs during story mode.
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| You Don't Run from Chance (15 points) | Successfully complete 50 Executions during story mode.
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