| Trophy | How to unlock
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| Cleared 10 Trials | Clear Secrets of Fighting, Military Destruction, Descent of the Fiends, and Captivating Goddesses (Bronze)
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| Cleared 14 Trials | Clear Desperation, Fateful Confrontation, Battlefield of the Abyss, and Giants of the Underworld (Bronze)
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| Cleared 2 Trials | Clear all Ninja Tutorials and Path to the Ultimate Ninja (Bronze)
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| Cleared 2 Trials (Bronze) | Clear all Ninja Tutorials and Path to the Ultimate Ninja.
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| Cleared 6 Trials | Clear Unrivaled Meting, Nightmarish Phantasms, Abysmal Lair, and Secrets of Shooting (Bronze)
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| Cleared 6 Trials(Bronze) | Clear Unrivalef Meeting, Nightmarish Phantasms, Abysmal Lair, and Secrets of shooting
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| Cleared Hard | Finish all chapters of the game on Hard (Bronze)
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| Cleared Master Ninja | Finish all chapters of the game on Master Ninja (Gold)
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| Cleared Tairon Under Alert | Completed Chapter 10 (Bronze)
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| Cleared The Caverns | Completed Chapter 15 (Bronze)
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| Cleared The Fiend Hunter | Completed Chapter 5 (Bronze)
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| Cleared The Way of the Ninja (Bronze) | Completed Chapter 1.
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| Cleared Very Hard | Finish all chapters of the game on Very Hard (Bronze)
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| Coin Aficionado(Silver) | clear 50 missions in ninja trials
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| Coin Collector | Get coins in all Ninja Trials (Silver)
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| Coin Master | Get platinum coins in all Ninja Trials (Gold)
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| Dabilahro Master (Bronze) | Defeat 1000 enemies with the Dabilahro.
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| Dragon Sword Master (Bronze) | Defeat 1000 enemies with the Dragon Sword.
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| Dual Kitana Master (Bronze) | Defeat 1000 enemies with the Dual Kitana.
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| Feat of Ultimate Destruction (Bronze) | Use the strongest Ultimate Technique on 100 enemies.
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| Fire Wheels Master (Bronze) | Use Fire Wheels successfully 100 times.
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| First Clear(Bronze) | Finish all chapters of the game.
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| Guillotine Throw Master (Bronze) | Use the Guillotine Throw on 100 enemies.
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| Heroes Never Give Up | Activate Hero Mode 100 times (Bronze)
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| Ice Storm Master (Bronze) | Use Ice Storm successfully 100 times.
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| Inazuma Master (Bronze) | Use Inazuma successfully 100 times.
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| Inferno Master (Bronze) | Use Inferno successfully 100 times.
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| Izuna Drop Master (Bronze) | Use the Izuna Dro on 100 enemies.
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| Just Put Me on(Bronze) | Hold/keep up to 99,999 Yellow Essence
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| Kitetsu Master (Bronze) | Defeat 1000 enemies with the Kitetsu.
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| Lead Scarab Hunter(Bronze) | find 10 scarabs.
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| Legendary Scarab Hunter(Silver) | Find all scarabs.
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| Lunar Staff Master (Bronze) | Defeat 1000 enemies with the Lunar Staff.
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| Master Scarab Hunter(Bronze) | find 30 scarabs.
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| Ninja Carnage | Kill every enemy in an Ambush (Bronze)
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| Ninja Massacre | Kill every enemy in all Ambushes (Silver)
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| Ninja Slaughter | Kill every enemy in 6 Ambushes (Bronze)
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| Over 10,000,000 Karma(Bronze) | in ninja trials get this score. best way to get this trophy is playing mission 2 of Unrivaled Meeting
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| Over 50,000,000 Karma | Get 50,000,000 Karma (Silver)
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| Projectile Weapons (Bronze) | Defeat 100 enemies with projectile weapons.
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| Rachel Master | Defeat 500 enemies with Rachel (Bronze)
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| Rookie Scarab Hunter(Bronze) | find 1 scarab.
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| Sorcery Master | Use Ice Storm successfully 100 times. (Bronze)
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| Thanks for Finding Me!(Bronze) | Find all the Team Ninja logos in story mode.
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| True Ultimate Ninja (Platinum) | Collect all trophies.
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| Vigoorian Flail Master (Bronze) | Defeat 1000 enemies with the Vigoorian Flail.
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| War Hammer Master (Bronze) | Defeat 1000 enemies with the War Hammer (Hayabusa).
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| Wooden Sword/Unlabored Flawlessness Master (Bronze) | Defeat 1000 enemies with the Wooden Sword/Unlabored Flawlessness.
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