| Trophy | How to unlock
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| 20 Sub-Stories (Bronze) | Complete 20 sub-story missions.
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| 4 Sub-Stories (Bronze) | Complete 4 sub-story missions.
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| 40 Sub-Stories (Bronze) | Complete 40 sub-story missions.
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| Akiyama Award (Silver) | Obtain 1,000,000 yen with Akiyama.
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| Amon Crusher (Gold) | Crush Amon and finish all 62 sub-story missions (Hidden).
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| Arena Star (Bronze) | Earn the title "Arena Star" in the fighting arena.
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| Boiled Turkey (Bronze) | Get a turkey in bowling.
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| Emblem Collector (Bronze) | Collect 10 emblems from the remaining gang members after finishing Kiriyu's team encounter missions.
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| First Carom (Bronze) | Score the first point in a game of four ball.
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| Hat Trick (Bronze) | Get a hat trick in darts.
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| Hot Spring Ping-Pong Magistrate (Bronze) | Smash the ball 3 times in 1 ping-pong match at the hot spring.
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| Human Karaoke Machine (Bronze) | Do all the karaoke songs once.
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| Kamuro Gourmet (Bronze) | Eat all the food from restaurants in Kamuro.
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| Kamuro's Master of Ecology (Bronze) | Pick up 20 pieces of trash (Hidden).
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| Kiryu Award (Silver) | Break 100 weapons in battle with Kiryu.
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| Let's Go Out After! (Bronze) | Go on a date with a cabaret girl after her working hours.
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| Master of Weapon Categories (Bronze) | Make 1 weapon from every weapon category.
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| Mr. Dress Up (Bronze) | Buy one of every type of dress in the "Making the No.1 Cabaret girl mission".
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| Mr. Outdoors (Bronze) | Play golf and fish 5 times.
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| Mr. Pause Menu (Bronze) | Obtain all memos for the pause menu.
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| Mr. Two Birds with One Stone (Bronze) | Hit two targets at the same time at the batting center.
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| Mr. VIP (Bronze) | Become a VIP at the massage parlor.
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| Name Hunter (Bronze) | Obtain all cabaret girls name cards.
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| Novice Gambler (Bronze) | Play all Japanese casino games once.
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| Novice Teacher (Bronze) | Train a fighter with Saejima and win 1 tournament with them.
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| Platinum Trophy (Platinum) | Get all trophies (Hidden).
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| Promotion Season (Bronze) | Promote one piece in Shoji.
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| Rampaging King of Kamuro (Bronze) | Knock 100 pedestrians to the ground.
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| Revelation Detective (Bronze) | Complete 3 Revelations.
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| Review Master (Bronze) | Review all scenes from Yakuza 1, 2, and 3.
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| Road to Becoming Pachinko King (Bronze) | Buy the Pachinko King trophy at the Volcano Pachinko Parlor.
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| Rookie Gambler (Bronze) | Play all Western casino games once.
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| Saejima Award (Silver) | Buy 5 pistols with Saejima.
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| Seven Pairs (Bronze) | Win a hand consisting of 7 2-set pairs in mahjong.
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| Story Part 1 Cleared (Bronze) | Clear Part 1 of the story (Hidden).
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| Story Part 2 Cleared (Bronze) | Clear Part 2 of the story (Hidden).
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| Story Part 3 Cleared (Bronze) | Clear Part 3 of the story (Hidden).
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| Story Part 4 Cleared (Bronze) | Clear Part 4 of the story (Hidden).
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| Strong Man of Kamuro (Bronze) | Travel 100km on foot.
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| Tanimura Award (Silver) | Win 10,000 points at the casino with Tanimura.
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| Thanks from all the staff (Gold) | Beat the game (Hidden).
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| The Joy of Giving (Bronze) | Give a present to a cabaret girl that she wears.
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| The Legendary Champion (Gold) | Beat the EX-HARD difficulty (Hidden).
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| The Persistent Man (Silver) | Clear the NORMAL difficulty setting without having cleared the EASY difficulty setting.
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| The Strongest Champion (Silver) | Get all characters to level 20.
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| The Ultimate Champion (Silver) | Beat Ultimate Fighting Mode (Hidden).
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| The Way of the Key Master (Bronze) | Open 5 coin locker doors.
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| Walking Bank (Bronze) | Obtain 10,000,000 yen.
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| Welcome to Club Sega (Bronze) | Play all games in Club Sega once.
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