| Trophy | How to unlock
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| Alchemical Aspirations (Bronze) | Use alchemy to create an original ninja tool.
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| Alchemical Genius (Silver) | Create the symbol of an Alchemical Genius.
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| Apprentice Ninja (Bronze) | Beat the game on Easy Difficulty.
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| Assassin's Pedigree (Silver) | Perform all the special Chimatsuri Sappo successfully.
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| Bandit Buster (Bronze) | Leave no bandit alive.
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| Chimatsuri Sappo (Bronze) | Perform a Chimatsuri Sappo successfully.
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| Covert Ninja (Bronze) | A true ninja always goes unseen.
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| Familiar Faces (Bronze) | You met some familiar ninja from bygone days.
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| First Class Ninja (Silver) | Beat the game on Hard difficulty.
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| Full-fledged Ninja (Bronze) | Beat the game on Normal difficulty.
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| Gaga for Greens (Silver) | Collect every type of weed.
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| Gears and Springs (Bronze) | I love wind-up toys!!
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| Gecko Hunter (Silver) | Collect every type of gecko.
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| Grapple Hook King (Bronze) | Throw that grapple hook!!
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| Hard Worker (Bronze) | Complete all the tutorials.
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| Jack-of-All-Trades (Silver) | Versatility is part of being a ninja.
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| King of the Beasts (Silver) | Encounter a bear like none other.
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| Moneymaker (Silver) | A true ninja also knows how to save.
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| Mushroom Village (Silver) | Collect every type of mushroom.
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| Ninja Hunter (Silver) | Every ninja must die.
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| Ninja Initiation (Bronze) | Level up for the first time.
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| Ninja Tool Craftsman (Bronze) | Become a connoisseur of alchemical ninja tools.
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| Onigami (Silver) | Become a master of using Chimatsuri Sappo.
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| Person of Power (Bronze) | You gave it your all to wipe the enemy out.
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| Recovery Elixir Popper (Bronze) | Coming back from the brink of death is part of being a ninja.
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| Saint (Silver) | A ninja loves all without bias.
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| Salmon, Salmon, and More Salmon (Bronze) | You really like salmon, don't you?
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| Shinobido Mastery (Platinum) | Acquire every trophy.
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| Shuriken Sharpshooter (Bronze) | Prove the strength of the shuriken.
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| Sticky Fingers (Bronze) | Did you steal something?
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| The First Step (Bronze) | Complete the first mission succesfully.
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| The Silencer (Bronze) | Silence every witness to your deeds.
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| Uzumbi Artisan (Bronze) | It's their fault for stepping on it.
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