| Challenge | Bonus
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|---|
| Amon's Sunglasses | Defeat Amon.
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| Beads of Good Fortune | Complete Challenge Lockers (unlock all one hundred lockers, under and above ground).
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| Dragon Sarashi | Complete Challenge Hostess Maker (complete all hostess side missions for Hostess Maker).
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| Dragon Shirt | Complete Challenge No.1 Hostess Maker (train all hostesses to reach the number one spot).
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| Ebisu Socks | Complete Challenge IF7-R (defeat all enemies).
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| Golden Gun | Complete Challenge Mini-games (complete each mini-game).
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| Hercules Gauntlet | Complete Challenge Modding (make all weapons and gear for both Works Kamiyama shops).
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| Journal fo a Rare Sign Maniac | Complete Challenge Fighter Maker (all apprentices have won the Rookie Tournament).
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| Kokurenkai Belt | Complete all of Akiyama's side missions.
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| Kokurenkai Headband | Complete all of Tanimura's side missions.
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| Kokurenkai Undergarment | Complete all of Saekima's side missions.
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| Limbo 2: Night of the Limbo | Complete all of Kiryu's side missions.
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| Luck Mallet | Complete Challenge Hostesses (complete all hostess side missions).
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| Lucky Binding | Complete Challenge Dining (order everything on the menu at every restaurant).
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| Muramasa Blade | Complete Challenge Coliseum (win all tournaments).
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| Rage Armor | Complete Challenge Police Scanner (solve cases received on the scanner).
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| Rage Bracelet | Complete Challenge Gang Encounters (defeat all gangs).
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| Rage Talisman | Complete Challenge Friends (become friends with specific people around the city).
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| Sacred Tree Arm Guards | Complete Challenge Master's Helper (complete all of Master's tasks).
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| Sacred Tree Armor | Complete Challenge Saigo's Training (complete all of Saigo's training courses).
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| Sacred Tree Shin Guards | Complete Challenge Nair's Kumite (help Nair reach her objective).
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| Substitude Stone | Complete Challenge Revelations (see all revelations).
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| War God Amulet | Complete Challenge HEAT Action (use all HEAT Actions).
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| War God Talisman | Complete Ultimate Skills at the main menu.
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| Trophy | How to unlock
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|---|
| Amon Defeated (Gold) | Defeat Amon and get through all the substories.
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| Heir to the Legend (Gold) | Clear Extra Hard Mode.
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| Heir to the Ultimate (Silver) | Clear all Ultimate Skill missions.
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| Kamurocho Tree Hugger (Bronze) | Pick up 20 pieces of trash around the city.
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| Part 1 Cleared (Bronze) | Clear Part 1 of the story.
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| Part 2 Cleared (Bronze) | Clear Part 2 of the story.
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| Part 3 Cleared (Bronze) | Clear Part 3 of the story.
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| Part 4 Cleared (Bronze) | Clear Part 4 of the story.
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| Platinum Trophy (Platinum) | Acquire all trophies in the game.
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| Thank You (Gold) | Clear the Finale.
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| Trophy | How to unlock
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|---|
| 20 Substories (Bronze) | Complete or finish twenty substories.
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| 4 Substories (Bronze) | Complete or finish four substories.
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| 40 Substories (Bronze) | Complete or finish forty substories.
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| After-Work Hookup (Bronze) | Have a hostess invite you on an after-work date.
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| Akiyama Award (Silver) | Earn 1,000,000 yen playing as Akiyama.
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| Boiled Turkey (Bronze) | Achieve a turkey in bowling.
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| Business Card Hunter (Bronze) | Receive business cards from all hostesses, including ones you train in 'Hostess Maker.'
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| Captain Two-fer (Bronze) | Successfully hit two panels at once at the batting center.
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| Casino Rookie (Bronze) | Play all casino gambling games.
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| Emblem Collector (Bronze) | Collect ten emblems from survivors during gang encounters.
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| Fashionista (Bronze) | Gather at least one outfit from each category in 'Hostess Maker.'
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| First Carom (Bronze) | Win the first point in Four-Ball pool.
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| Gourmet of Kamurocho (Bronze) | Order something at least once at each restaurant.
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| Hat Trick (Bronze) | Achieve a hat trick in darts.
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| Heir to the Powerful (Silver) | Max out all characters to level 20.
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| History Buff (Bronze) | View all Reminiscences from YAKUZA to YAKUZA 3.
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| Indomitable (Silver) | Clear Normal Mode without reverting to Easy Mode.
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| Kamurocho Iron Man (Bronze) | Traverse 100 kilometers or more.
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| Kamurocho Stampede King (Bronze) | Knock over 100 people you pass by.
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| Kiryu Award (Silver) | Destroy 100 weapons you pick up playing as Kiryu.
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| Master in Training (Bronze) | Have one of your apprentices win the Rookie Tournament in 'Fighter Maker.'
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| Memo Master (Bronze) | Collect all Memos in the Pause Menu.
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| Mr. Outdoors (Bronze) | Golf and fish five times each.
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| Novice Gambler (Bronze) | Play all non-casino gambling games.
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| Revelation Seeker (Bronze) | Acquire three Revelations.
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| Saejima Award (Silver) | Purchase five hand guns playing as Saejima.
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| Seven Pairs (Bronze) | Collect two of each different tile pattern in mahjong.
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| Shogi Promotion (Bronze) | Achieve a promotion in shogi.
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| Star of the Coliseum (Bronze) | Acquire the title 'Star of the Coliseum.'
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| Table Tennis Pro (Bronze) | Smash the ball three times in one match.
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| Tanimura Award (Silver) | Acquire 10,000 casino points playing as Tanimura.
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| The Human Jukebox (Bronze) | Sing all songs at karaoke.
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| The Joy of Gifting (Bronze) | Have a hostess wear a present you give her.
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| VIP Member (Bronze) | Become a VIP member at the massage parlor.
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| Walking Bank (Bronze) | Possess 10,000,000 yen or more.
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| Way of the Key Master (Bronze) | Open five coin lockers.
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| Way of the Pachinko King (Bronze) | Obtain the trophy prize in pachinko.
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| Weapon Master (Bronze) | Create one or more weapons for each weapon category.
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| Welcome to SEGA (Bronze) | Play all minigames at Club SEGA.
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